| Annie’s Canyon | 1.3 miles | Easy |
| Annie’s Canyon (via San Elijo Lagoon) | 2.7 miles | Easy |
| Batiquitos Lagoon Trail | 3.0 miles | Easy |
| Bayside Trail | 2.0 miles | Easy-Moderate |
| Black Mountain (via Miner’s Ridge) | 2.6 miles | Moderate |
| Black Mountain (via Nighthawk Trail) | 4.1 miles | Moderate |
| Black Mountain (via Service Road) | 4.1 miles | Moderate |
| Border Field State Park | 3.2 miles | Easy |
| Bridle Loop Trail | 2.4 miles | Easy |
| Carmel Mountain Preserve | 3.1 miles | Easy |
| Chollas Lake | 3.0 miles | Easy |
| Coastal Trail – Cabrillo NM | 1.0 miles | Easy |
| Del Mar Mesa Preserve | 4.4 miles | Easy-Moderate |
| Denk Tank Mountain | 3.5 miles | Moderate |
| Dictionary Hill | 2.25 miles | Moderate |
| Dust Devil Trail | 1.8 miles | Easy |
| Emerald Hills | 1.3 miles | Easy |
| Florida Canyon | 1.9 miles | Easy |
| Gonzales Canyon | 2.9 miles | Moderate |
| Juniper Canyon | 2.95 miles | Moderate |
| Knott Grove Trail | 3.0 miles | Easy |
| Lake Calavera | 3.4 miles | Moderate |
| Lopez Canyon | 4.0 miles | Easy |
| Los Penasquitos Canyon – East | 6.3 miles | Easy-Moderate |
| Lusardi Creek | 5.3 miles | Moderate |
| McCoy Trail | 0.7 miles | Easy |
| Morrison Pond | 1.6 miles | Easy |
| Mother Miguel Mountain | 4.1 miles | Moderate |
| Navajo Canyon Trail | 2.5 miles | Easy |
| Oceanside Trail | 0.85 miles | Moderate |
| Otay River Valley Trail | 4.75 miles | Easy |
| Presidio Park Loop | 1.6 miles | Easy |
| Rice & Snake Canyons | 4.3 miles | Easy |
| Ruffin Canyon | 1.27 miles | Moderate |
| San Dieguito Lagoon Trail | 2.8 miles | Easy |
| San Elijo Lagoon | 1.0 miles | Moderate |
| Santa Fe Valley Connector Trail | 4.6 miles | Moderate |
| Santa Fe Valley Trail | 3.6 miles | Easy-Moderate |
| Seven Bridges | 5.9 miles | Moderate |
| Shepard Canyon Loop | 3.5 miles | Easy |
| Switzer Canyon | 1.3 miles | Easy |
| Tecolote Canyon – North | 4.5 miles | Moderate |
| Tecolote Canyon – South | 6.4 miles | Moderate |
| Torrey Pines State Park – Broken Hill Overlook | 4.0 miles | Easy-Moderate |
| Torrey Pines State Park – Red Butte | 2.7 miles | Easy-Moderate |
| Torrey Pines State Park Extension | 3.6 miles | Moderate |