| Agua Benchmark | 1.1 miles | Easy |
| Agua Caliente Desert Overlook | 1.5 miles | Easy |
| Al Holden | 7.2 miles* | Strenuous |
| Arena Benchmark | 0.75 | Moderate |
| Blue Angel Peak | 4.2 miles | Moderate |
| Bonny Benchmark | 4.9 miles | Moderate |
| Borrego Mountain-East Butte | 1.8 miles | Moderate |
| Borrego Mountain-West Butte | 2.1 miles | Moderate |
| Borrego Palm Canyon Nature Trail | 2.6 miles | Easy |
| Calcite Mine | 3.95 miles | Moderate |
| Cody Benchmark | 6.9 miles* | Challenging |
| Collins Benchmark | 14.2 miles* | Challenging |
| Coyote Mountain | 5.2 miles | Strenuous |
| Diablo Benchmark | 2.6 miles | Strenuous |
| Elder Benchmark | 5.1 miles* | Challenging |
| False Sombrero | 1.7 miles | Challenging |
| Fonts Point | 0.2 miles | Easy |
| Gasp Benchmark | 6.4 miles | Strenuous |
| Ghost Mountain | 2.25 miles | Moderate |
| Granite Mountain (via Cool Canyon) | 7.0 miles | Strenuous |
| Grapevine Mountain | 6.7 miles | Strenuous |
| Groan Benchmark | 6.6 miles | Strenuous |
| Guard Benchmark | 1.0 miles | Easy |
| Knob Benchmark | 14.2 miles* | Challenging |
| Indian Hill | 2.1 miles | Moderate |
| Indianhead | 8.2 miles | Challenging |
| Jacumba Mountain | 3.1 miles | Strenuous |
| Lute Benchmark | 2.8 miles | Moderate |
| Mile High Mountain | 15.8 miles* | Challenging |
| Mine Peak | 1.6 miles | Moderate |
| Moan Benchmark | 11.0 miles* | Challenging |
| Mount Tule | 2.8 miles | Moderate |
| Mountain Palm Springs Trail | 2.3 miles | Moderate |
| Nopal Benchmark | 0.25 miles | Easy |
| North Pinyon Mountain (Peak 3640) | 4.25 miles | Moderate |
| Ode Benchmark | 1.5 miles | Moderate |
| Palm Mesa High Point | 9.7 miles | Strenuous |
| Palms Benchmark | 5.1 miles* | Challenging |
| Peak 3339 | 7.2 miles | Strenuous |
| Perpendicular Bluff Benchmark | 2.55 miles | Moderate |
| Pictographs Trail | 2.3 miles | Moderate |
| Piedras Grandes | 2.3 miles | Moderate |
| Pike Benchmark | 6.9 miles* | Strenuous |
| Pinyon Mountain | 1.5 miles | Moderate |
| Pinyon Ridge | 9.1 miles* | Moderate |
| Puff Benchmark | 11.0 miles* | Strenuous |
| Pyramid Peak | 4.6 miles | Strenuous |
| Rass Benchmark | 2.7 miles | Moderate |
| Red Hill | 3.4 miles | Moderate |
| Red Top | 6.6 miles* | Challenging |
| Rosa Point | 15.8 miles* | Challenging |
| San Ysidro East Peak | 11.6 miles* | Challenging |
| San Ysidro Mountain | 4.0 miles | Strenuous |
| Sawtooth High Point | 6.6 miles* | Challenging |
| Sentenac Mountain | 2.1 miles | Moderate |
| Sombrero Peak | 3.0 miles | Challenging |
| Split Mountain East | 4.4 miles | Strenuous |
| Split Mountain West | 3.9 miles | Strenuous |
| Square Top | 5.4 miles | Challenging |
| Stage Benchmark | 9.6 miles | Strenuous |
| Store Benchmark | 4.1 miles | Moderate |
| Sunset Mountain | 3.6 miles | Challenging |
| Ted Benchmark | 4.25 miles | Strenuous |
| The Slot | 2.8 miles | Easy |
| The Thimble | 3.2 miles | Challenging |
| Travelers Peak | 2.6 miles | Strenuous |
| Vallecito Mountains High Point | 5.6 miles | Challenging |
| Villager Peak | 14.0 miles | Challenging |
| Webo Benchmark | 6.7 miles | Strenuous |
| Wee Benchmark | 1.6 miles | Moderate |
| Whale Peak | 5.0 miles | Strenuous |
| Whip Benchmark | 0.25 miles | Easy |
| White Benchmark | 4.9 miles | Moderate |
| Wilson Benchmark | 9.1 miles* | Moderate |
| Windy Benchmark | 5.5 miles | Moderate |